Generation

Module -T generates polycrystals as tessellations. The two main capabilities are: (i) the generation of tessellations from cell properties (e.g. a size distribution) and (ii) the generation of multiscale tessellations (i.e. including cell subdivisions). These capabilities can also be used together. Tessellations are Laguerre (or Voronoi) tessellations and are therefore composed of convex cells. Finally, the tessellations can be “regularized” by removing their smallest features (edges and faces), which enables good-quality meshing with module -M. Periodicity conditions can be prescribed. Crystal orientations are provided for the grains. The output is a tessellation file written at a scalar (vectorial) or raster format.

Generalities

Tessellations are built in a bounded domain of space. A cubic domain is used by default, but cylindrical domains and spherical domains are also available while arbitrary convex domains can be defined, as illustrated below. Tessellations can contain an arbitrary number of cells and can be generated in 3D or in 2D. All capabilities available in 3D also are available in 2D. Crystal orientations are assigned to the cells. Below is the generation of 200-cell Poisson-Voronoi tessellations of various 3D domains:

$ neper -T -n 1000
$ neper -T -n 1000 -domain "cylinder(1,100)"
$ neper -T -n 1000 -domain "sphere(1,1000)"
_images/gene_gene.png

gene_gene.sh

Tessellations from morphological properties

Tessellations can be of different types, depending on the ways the seeds are defined. Poisson-Voronoi tessellations are obtained when the seed positions are randomly chosen from a uniform distribution. Hardcore Voronoi tessellations are obtained when a non-zero repulsion distance is set between the seeds. Centroidal Voronoi tessellations are such that the cell seeds and centroids coincide, which can be ensured by an iterative procedure. Finally, Laguerre Voronoi tessellations can be obtained when a non-zero weight is assigned to each seed, as illustrated below. Such a collection of algorithms enables to generate a wide variety of microstructures.

$ neper -T -n 1000 -morpho voronoi (or $ neper -T -n 1000)
$ neper -T -n 1000 -morpho graingrowth
$ neper -T -n 1000 -morpho "diameq:dirac(1),sphericity:lognormal(0.145,0.03,1-x)"
_images/gene_morp.png

gene_morp.sh

Multiscale tessellations

Multiscale tessellations can also be generated. Such tessellations result from a tessellation whose each cell is further divided by tessellation (and so on). All capabilities available for 1-scale tessellations are available for multiscale tessellations. Such a process is suitable to model polycrystals where primary grains are divided into several grains. Multiscale tessellations can also be meshed.

$ neper -T -n 200::from_morpho            -morpho "gg::lamellar(w=0.02)"
$ neper -T -n 200::1000*size              -morpho 'gg::diameq:dirac(1),sphericity:lognormal(0.145,0.03,1-x)'
$ neper -T -n 200::1000*size::from_morpho -morpho 'gg::diameq:dirac(1),sphericity:lognormal(0.145,0.03,1-x)::lamellar(w=0.01:0.03)'
_images/gene_mult.png

gene_mult.sh

Periodic and semi-periodic tessellations

Full periodicity or semi-periodicity can be prescribed to the domain and therefore to the resulting tessellation. Full periodicity can be used to avoid boundary effects and reduce the size of the representative volume element, while semi-periodicity preserves the domain boundaries in some directions. Below are 1000-cell tessellations with full periodicity, 2-direction semi-periodicity and 1-direction semi-periodicity, successively, viewed along the y axis. These tessellations can be meshed just as non-periodic tessellations.

$ neper -T -n 1000 -morpho graingrowth -periodicity all
$ neper -T -n 1000 -morpho graingrowth -periodicity x,y
$ neper -T -n 1000 -morpho graingrowth -periodicity x
_images/gene_peri.png

gene_peri.sh

Regularization

Tessellations usually contain a large number of small edges and faces. These features are negligible from the point of view of the cell morphologies, but they are strongly detrimental to meshing because they introduce strong constraints. Neper includes a “regularization” technique that consists in removing the small edges and faces, which in the end results in better-quality meshes. The effect of regularization is shown below: (left) before regularization, (middle) after regularization and (right) edge length distribution (red) before and (green) after regularization. Note that the overall grain morphology does not change while most of the small edges are deleted.

_images/gene_regu.png

gene_regu.sh

Scalar and raster formats

Voronoi tessellations can be written at scalar and raster formats. Scalar tessellations can be meshed into tetrahedral using -M while raster tessellations are adapted for fast-Fourier transform (FFT) computations. for The size of the grid can be specified. Below are shown a scalar tessellation and the corresponding raster tessellation constructed on a grid of 64 x 64 x 64 voxels.

$ neper -T -n 1000 -morpho graingrowth -format tess,tesr -tesrsize 64
_images/gene_form.png

gene_form.sh

Statistics

A wide variety of statistics are available on the cells and even on the faces, edges, vertices and seeds. Morphology and topology properties are available. For example, the cell variables include: the centroid coordinates, the volume, the numbers and lists of vertices, edges and faces, the areas and equations of the faces, etc. An example of statistical analysis on a 300-cell tessellation is illustrated on the right.

$ neper -T -n 1000 -morpho gg -per 1 -statcell diameq:rel,facenb
_images/gene_stat.png

gene_stat.sh